NAME
R_mds - project distance matrix into lower number of dimensions
SYNOPSIS
R_mds -k <filtered_kmers.txt> -p <pheno_file>
DESCRIPTION
Projects distance matrix into lower number of dimensions Requires R and rhdf5 to be installed, see github wiki for more details
OPTIONS
Required
- -d, --dist
-
Distance matrix output by kmds
- -p, --pheno
-
Phenotype file used by seer
Optional
- -o, --output
-
Output prefix (default 'all_structure')
- --pc
-
Number of dimensions to project into (default 3)
- -R
-
R executable (default 'which R')
- -h, --help
-
Displays this message
AUTHOR
This manpage was written by Andreas Tille for the Debian distribution and can be used for any other usage of the program.