---
name: "RG::Utils::Copf"
section: "3pm"
platform: "linux"
package: "librg-utils-perl"
version: "1.0.43-9"
release: "Debian 13 (Trixie)"
platforms: ["linux"]
url: "https://new.carta.tech/RG::Utils::Copf"
---

# RG::Utils::Copf(3pm)

Rost Lab perl utilities

## NAME

RG::Utils::Copf - Rost Lab perl utilities

## SYNOPSIS

use RG::Utils::Copf;

## FUNCTIONS

See module source for description.

- amino\_acid\_convert\_3\_to\_1

  - amino\_acid\_convert\_3\_to\_1\_ini

  - brIniErr

  - brIniGetArg

  - brIniHelp

  - brIniHelpLoop

  - brIniHelpRdItself

  - brIniRdDef

  - brIniSet

  - brIniWrt

  - bynumber

  - bynumber\_high2low

  - cleanUp

  - complete\_dir

  - completeDir

  - convAliGen

  - convDsspGen

  - convFastamul2many

  - convFssp2Daf

  - convFsspGen

  - convGcg2fasta

  - convHssp2seq

  - convHsspGen

  - convMsf2saf

  - convPdb2seq

  - convPdbGen

  - convPhd2dssp

  - convPhd2seq

  - convPhdGen

  - convPir2fasta

  - convPirmulGen

  - convSaf2many

  - convSeq2fastaPerl

  - convSeq2seq

  - convSeq2seqOld

  - convSeqGen

  - convSwiss2fasta

  - copf

  - dsspGetChain

  - dsspRdSeq

  - dsspWrtFromPhd

  - errSbr

  - errSbrMsg

  - fastaRdGuide

  - fastaRdMul

  - fastaWrt

  - fastaWrtMul

  - fctRunTimeLeft

  - fctSeconds2time

  - gcgRd

  - gcgWrt

  - getDistanceNewCurveIde

  - getFileFormatQuick

  - get\_in\_keyboard

  - get\_range

  - get\_rangeHyphen

  - getSysARCH

  - hsspCorrectNali

  - hsspGetChain

  - hsspGetChainLength

  - hsspRdAli

  - hsspRdHeader

  - hsspRdSeqSecAccOneLine

  - ini

  - iniDef

  - iniHelpLoc

  - is\_chain

  - isDaf

  - is\_dssp

  - isFasta

  - isFastaMul

  - is\_fssp

  - isGcg

  - is\_hssp

  - isMsf

  - isPdb

  - is\_pdbid

  - isPhdAcc

  - isPhdBoth

  - isPhdHtm

  - isPhdSec

  - isPir

  - isPirMul

  - is\_ppcol

  - isRdb

  - is\_rdb\_htmref

  - is\_rdb\_htmtop

  - is\_rdb\_nnDb

  - isSaf

  - is\_strip

  - isSwiss

  - msfBlowUp

  - msfCheckFormat

  - msfCompress

  - msfCountNali

  - msfRd

  - msfShorten

  - msfWrt

  - open\_file

  - pdbExtrSequence

  - pirRdMul

  - pirWrtMul

  - pirWrtOne

  - rdRdbAssociative

  - rdRdbAssociativeNum

  - safCompress

  - safRd

  - safWrt

  - seqGenWrt

  - swissRdSeq

  - sysDate

  - sysGetUserLoc

  - sysRunProg

  - wrtLoc

  ## VARIABLES

## AUTHOR

B. Rost \<rost@rostlab.org\> L. Kajan \<lkajan@rostlab.org\>

## SEE ALSO

- Main website

  \<http://rostlab.org/\>