NAME
ParseHeaders.py - Parses pRESTO annotations in FASTA/FASTQ sequence headers
DESCRIPTION
usage: ParseHeaders.py [--version] [-h] ...
Parses pRESTO annotations in FASTA/FASTQ sequence headers
help:
- --version
-
show program's version number and exit
- -h, --help
-
show this help message and exit
subcommands:
-
Annotation operation
- add
-
Adds field/value pairs to header annotations
- collapse
-
Collapses header annotations with multiple entries
- copy
-
Copies header annotation fields
- delete
-
Deletes fields from header annotations
- expand
-
Expands annotation fields with multiple values
- merge
-
Merge multiple annotations fields into a single field
- rename
-
Renames header annotation fields
- table
-
Writes sequence headers to a table
output files:
-
reheader-pass
-
reads passing annotation operation and modified accordingly.
-
reheader-fail
-
raw reads failing annotation operation.
-
headers
-
tab delimited table of the selected annotations.
output annotation fields:
-
<user defined>
-
annotation fields specified by the -f argument.
AUTHOR
This manpage was written by Andreas Tille for the Debian distribution and
can be used for any other usage of the program.