NAME
ParseDb.py - Repertoire clonal assignment toolkit (Python 3)
DESCRIPTION
usage: ParseDb.py [--version] [-h] ...
Parses tab delimited database files
help:
- --version
-
show program's version number and exit
- -h, --help
-
show this help message and exit
subcommands:
-
Database operation
- add
-
Adds field and value pairs.
- delete
-
Deletes specific records.
- drop
-
Deletes entire fields.
- index
-
Adds a numeric index field.
- rename
-
Renames fields.
- select
-
Selects specific records.
- sort
-
Sorts records by field values.
- update
-
Updates field and value pairs.
- merge
-
Merges files.
- split
-
Splits database files by field values.
output files:
-
sequences
-
FASTA formatted sequences output from the subcommands fasta and clip.
-
<field>-<value>
-
database files partitioned by annotation <field> and <value>.
-
parse-<command>
-
output of the database modification functions where <command> is one of the subcommands add, index, drop, delete, rename, select, sort or update.
required fields:
-
sequence_id
AUTHOR
This manpage was written by Nilesh Patra for the Debian distribution and
can be used for any other usage of the program.