---
name: "NanoLyse"
section: "1"
platform: "linux"
package: "nanolyse"
version: "1.2.0-4"
release: "Debian 13 (Trixie)"
platforms: ["linux"]
url: "https://new.carta.tech/NanoLyse"
---

# NanoLyse(1)

remove lambda phage reads from a fastq file

## NAME

NanoLyse - remove lambda phage reads from a fastq file

## SYNOPSIS

**NanoLyse** \[-h\] \[-v\] \[-r REFERENCE\] \[--logfile LOGFILE\]

## DESCRIPTION

Remove reads mapping to the lambda genome. Reads fastq from stdin and writes to stdout.

## OPTIONS

### optional arguments:

- **-r**, **--reference** REFERENCE

  Specify a reference fasta file against which to filter.

- **--logfile** LOGFILE

  Specify the path and filename for the log file.

### General options:

- **-h**, **--help**

  show the help and exit

- **-v**, **--version**

  Print version and exit.

## EXAMPLES:

-

  gunzip **-c** reads.fastq.gz \| NanoLyse \| gzip \> reads\_without\_lambda.fastq.gz gunzip **-c** reads.fastq.gz \| NanoLyse \| NanoFilt **-q** 12 \| gzip \> filtered\_reads\_without\_lambda.fastq.gz gunzip **-c** reads.fastq.gz \| NanoLyse **--reference** mygenome.fa.gz \| gzip \> reads\_without\_mygenome.fastq.gz

## AUTHOR

 This manpage was written by Andreas Tille for the Debian distribution and\
  can be used for any other usage of the program.