NAME
NanoLyse - remove lambda phage reads from a fastq file
SYNOPSIS
NanoLyse [-h] [-v] [-r REFERENCE] [--logfile LOGFILE]
DESCRIPTION
Remove reads mapping to the lambda genome. Reads fastq from stdin and writes to stdout.
OPTIONS
optional arguments:
- -r, --reference REFERENCE
-
Specify a reference fasta file against which to filter.
- --logfile LOGFILE
-
Specify the path and filename for the log file.
General options:
- -h, --help
-
show the help and exit
- -v, --version
-
Print version and exit.
EXAMPLES:
-
gunzip -c reads.fastq.gz | NanoLyse | gzip > reads_without_lambda.fastq.gz gunzip -c reads.fastq.gz | NanoLyse | NanoFilt -q 12 | gzip > filtered_reads_without_lambda.fastq.gz gunzip -c reads.fastq.gz | NanoLyse --reference mygenome.fa.gz | gzip > reads_without_mygenome.fastq.gz
AUTHOR
This manpage was written by Andreas Tille for the Debian distribution and
can be used for any other usage of the program.