---
name: "MakeDb.py"
section: "1"
platform: "linux"
package: "changeo"
version: "1.3.0-3"
release: "Debian 13 (Trixie)"
platforms: ["linux"]
url: "https://new.carta.tech/MakeDb.py"
---

# MakeDb.py(1)

Repertoire clonal assignment toolkit (Python 3)

## NAME

MakeDb.py - Repertoire clonal assignment toolkit (Python 3)

## DESCRIPTION

usage: MakeDb.py \[--version\] \[-h\]  ...

Create tab-delimited database file to store sequence alignment information

### help:

- **--version**

  show program's version number and exit

- **-h**, **--help**

  show this help message and exit

### subcommands:

-

  Aligner used

- igblast

  Process igblastn output.

-

  igblast-aa

-

  Process igblastp output.

- imgt

  Process IMGT/HighV-Quest output (does not work with V-QUEST).

- ihmm

  Process iHMMune-Align output.

### output files:

-

  db-pass

-

  database of alignment records with functionality information, V and J calls, and a junction region.

-

  db-fail

-

  database with records that fail due to no productivity information, no gene V assignment, no J assignment, or no junction region.

### universal output fields:

-

  sequence\_id, sequence, sequence\_alignment, germline\_alignment, rev\_comp, productive, stop\_codon, vj\_in\_frame, locus, v\_call, d\_call, j\_call, junction, junction\_length, junction\_aa, v\_sequence\_start, v\_sequence\_end, v\_germline\_start, v\_germline\_end, d\_sequence\_start, d\_sequence\_end, d\_germline\_start, d\_germline\_end, j\_sequence\_start, j\_sequence\_end, j\_germline\_start, j\_germline\_end, np1\_length, np2\_length, fwr1, fwr2, fwr3, fwr4, cdr1, cdr2, cdr3

### imgt specific output fields:

-

  n1\_length, n2\_length, p3v\_length, p5d\_length, p3d\_length, p5j\_length, d\_frame, v\_score, v\_identity, d\_score, d\_identity, j\_score, j\_identity

### igblast specific output fields:

-

  v\_score, v\_identity, v\_support, v\_cigar, d\_score, d\_identity, d\_support, d\_cigar, j\_score, j\_identity, j\_support, j\_cigar

### ihmm specific output fields:

-

  vdj\_score

### 10X specific output fields:

-

  cell\_id, c\_call, consensus\_count, umi\_count, v\_call\_10x, d\_call\_10x, j\_call\_10x, junction\_10x, junction\_10x\_aa

## AUTHOR

 This manpage was written by Nilesh Patra for the Debian distribution and\
  can be used for any other usage of the program.