---
name: "ImageSetStatistics"
section: "1"
platform: "linux"
package: "ants"
version: "2.1.0-5"
release: "Debian 9 (Stretch)"
platforms: ["linux"]
url: "https://new.carta.tech/ImageSetStatistics"
---

# ImageSetStatistics(1)

part of ANTS registration suite

## NAME

ImageSetStatistics - part of ANTS registration suite

## DESCRIPTION

Usage: ImageSetStatistics ImageDimension controlslist.txt outimage.nii whichstat {roi.nii} {imagelist2forsimilarityweightedstats.txt}

- whichstat = 0:

  median,  1:  max prob appearance  , 2: weighted mean appearance ,  3: trimmed mean , 4 : max value , option 5 : similarity-weighted (must pass imagelist2 as well) else median , option 6 : same as similarity-weighted option 5 but the label corresponds to the image that provides the best local match ... useful if you want to MRF smooth these indices  , option 7 : similar to 5 but expects the max-value to be stored in the ROI image and uses it to get the intensity ...

- example:

  ImageSetStatistics  3   imagelist.txt  maxvalueimage.nii.gz 4

-

  similarity weighted **---** pass in a list of similarity images here which will be used to select the best label **---** thus, number of similarity images must match the number of label images .