NAME
FilterSeq.py - Filters sequences in FASTA/FASTQ files
DESCRIPTION
usage: FilterSeq.py [--version] [-h] ...
Filters sequences in FASTA/FASTQ files
help:
- --version
-
show program's version number and exit
- -h, --help
-
show this help message and exit
subcommands:
-
Filtering operation
- length
-
Filters reads by length.
- missing
-
Filters reads by N or gap character count.
- repeats
-
Filters reads by consecutive nucleotide repeats.
- quality
-
Filters reads by quality score.
- maskqual
-
Masks low quality positions.
- trimqual
-
Trims sequences by quality score decay.
output files:
-
<command>-pass
-
reads passing filtering operation and modified accordingly, where <command> is the name of the filtering operation that was run.
-
<command>-fail
-
raw reads failing filtering criteria, where <command> is the name of the filtering operation.
output annotation fields:
-
None
AUTHOR
This manpage was written by Andreas Tille for the Debian distribution and
can be used for any other usage of the program.