ConvertHeaders.py1
Converts sequence headers to the presto format
Overview
usage: ConvertHeaders.py [--version] [-h] ...
Converts sequence headers to the pRESTO format
help:
-
--version -
show program's version number and exit
-
-h, --help -
show this help message and exit
subcommands:
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Conversion method
- generic
-
Converts sequence headers without a known annotation system.
- 454
-
Converts Roche 454 sequence headers.
- genbank
-
Converts NCBI GenBank and RefSeq sequence headers.
- illumina
-
Converts Illumina sequence headers.
- imgt
-
Converts sequence headers output by IMGT/GENE-DB.
- migec
-
Converts headers for consensus sequence generated by the MIGEC tool.
- sra
-
Converts NCBI SRA or EMBL-EBI ENA sequence headers.
output files:
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convert-pass
-
reads passing header conversion.
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convert-fail
-
raw reads failing header conversion.
output annotation fields:
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<format defined>
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the annotation fields added are specific to the header format of the input file.