---
name: "ConvertDb.py"
section: "1"
platform: "linux"
package: "changeo"
version: "1.3.0-3"
release: "Debian 13 (Trixie)"
platforms: ["linux"]
url: "https://new.carta.tech/ConvertDb.py"
---

# ConvertDb.py(1)

Repertoire clonal assignment toolkit (Python 3)

## NAME

ConvertDb.py - Repertoire clonal assignment toolkit (Python 3)

## DESCRIPTION

usage: ConvertDb.py \[--version\] \[-h\]  ...

Parses tab delimited database files

### help:

- **--version**

  show program's version number and exit

- **-h**, **--help**

  show this help message and exit

### subcommands:

-

  Database operation

- airr

  Converts input to an AIRR TSV file.

- changeo

  Converts input into a Change-O TSV file.

- fasta

  Creates a fasta file from database records.

- baseline

  Creates a specially formatted fasta file from database records for input into the BASELINe website. The format groups clonally related sequences sequentially, with the germline sequence preceding each clone and denoted by headers starting with "\>\>".

- genbank

  Creates files for GenBank/TLS submissions.

### output files:

-

  airr

-

  AIRR formatted database files.

-

  changeo

-

  Change-O formatted database files.

-

  sequences

-

  FASTA formatted sequences output from the subcommands fasta and clip.

-

  genbank

-

  feature tables and fasta files containing MiAIRR compliant input for tbl2asn.

### required fields:

-

  sequence\_id, sequence, sequence\_alignment, junction, v\_call, d\_call, j\_call, v\_germline\_start, v\_germline\_end, v\_sequence\_start, v\_sequence\_end, d\_sequence\_start, d\_sequence\_end, j\_sequence\_start, j\_sequence\_end

### optional fields:

-

  germline\_alignment, c\_call, clone\_id

## AUTHOR

 This manpage was written by Nilesh Patra for the Debian distribution and\
  can be used for any other usage of the program.