NAME
CAT - tool for taxonomic classification of contigs and metagenome-assembled genomes (MAGs)
SYNOPSIS
CAT (prepare | contigs | bin | bins | add_names | summarise) [-v / --version] [-h / --help]
DESCRIPTION
Run Contig Annotation Tool (CAT) or Bin Annotation Tool (BAT).
OPTIONS
Required choice:
- prepare
-
Download database files and construct databases.
- contigs
-
Run CAT.
- bin
-
Run BAT on a single bin.
- bins
-
Run BAT on a set of bins.
- add_names
-
Add taxonomic names to CAT or BAT output files.
- summarise
-
Summarise a named CAT or BAT classification file.
Optional arguments:
- -v, --version
-
Print version information and exit.
- -h, --help
-
Show this help message and exit.
AUTHOR
This manpage was written by Andreas Tille for the Debian distribution and
can be used for any other usage of the program.