---
name: "Bio::Tradis::RemoveTags"
section: "3pm"
platform: "linux"
package: "bio-tradis"
version: "1.4.5+dfsg2-2"
release: "Debian 13 (Trixie)"
platforms: ["linux"]
url: "https://new.carta.tech/Bio::Tradis::RemoveTags"
---

# Bio::Tradis::RemoveTags(3pm)

Remove tags from seqs a fastq file

## NAME

Bio::Tradis::RemoveTags - Remove tags from seqs a fastq file

## VERSION

version 1.4.5

## SYNOPSIS

Reads in a fastq file with tradis tags already attached to the start of the sequence Removes tags from the sequence and quality strings Outputs a file \*.rmtag.fastq unless an out file is specified

```
   use Bio::Tradis::RemoveTags;

   my $pipeline = Bio::Tradis::RemoveTags->new(fastqfile => 'abc', tag => 'abc');
   $pipeline->remove_tags();
```

## PARAMETERS

### Required

- •

  `"fastqfile"` - path to/name of file to filter

- •

  `"tag"` - TraDIS tag to remove

### Optional

- •

  `"mismatch"` - number of mismatches to allow when removing the tag. Default = 0

- •

  `"outfile"` - defaults to `"file.rmtag.fastq"` for and input file named `"file.fastq"`

## METHODS

`"remove_tags"` - output all reads with the tags removed to `"outfile"`

## AUTHOR

Carla Cummins \<path-help@sanger.ac.uk\>

## COPYRIGHT AND LICENSE

This software is Copyright (c) 2013 by Wellcome Trust Sanger Institute.

This is free software, licensed under:

```
  The GNU General Public License, Version 3, June 2007
```