Reference

Bio::Tradis::Parser::Cigar(3pm)

Take in a cigar string and output start and end relative to the reference sequence

NAME

Bio::Tradis::Parser::Cigar - Take in a cigar string and output start and end relative to the reference sequence

VERSION

version 1.4.5

SYNOPSIS

Take in a cigar string and output start and end relative to the reference sequence

   use Bio::Tradis::Parser::Cigar;
   
   my $cigar = Bio::Tradis::Parser::Cigar->new(coordinate => 123, cigar => '10S90M');
   $cigar->start;
   $cigar->end;

AUTHOR

Carla Cummins <[email protected]>

COPYRIGHT AND LICENSE

This software is Copyright (c) 2013 by Wellcome Trust Sanger Institute.

This is free software, licensed under:

  The GNU General Public License, Version 3, June 2007

History