---
name: "Bio::Tradis"
section: "3pm"
platform: "linux"
package: "bio-tradis"
version: "1.4.5+dfsg2-2"
release: "Debian 13 (Trixie)"
platforms: ["linux"]
url: "https://new.carta.tech/Bio::Tradis"
---

# Bio::Tradis(3pm)

Bio-Tradis contains a set of tools to analyse the output from TraDIS analyses. For more information on the TraDIS method, see http://genome.cshlp.org/content/19/12/2308

## NAME

Bio::Tradis - Bio-Tradis contains a set of tools to analyse the output from TraDIS analyses. For more information on the TraDIS method, see http://genome.cshlp.org/content/19/12/2308

## VERSION

version 1.4.5

## SYNOPSIS

Bio-Tradis provides functionality to:

- •

  detect TraDIS tags in a BAM file - Bio::Tradis::DetectTags

- •

  add the tags to the reads - Bio::Tradis::AddTagsToSeq

- •

  filter reads in a FastQ file containing a user defined tag - Bio::Tradis::FilterTags

- •

  remove tags - Bio::Tradis::RemoveTags

- •

  map to a reference genome - Bio::Tradis::Map

- •

  create an insertion site plot file - Bio::Tradis::TradisPlot

Most of these functions are available as standalone scripts or as perl modules.

## AUTHOR

Carla Cummins \<path-help@sanger.ac.uk\>

## COPYRIGHT AND LICENSE

This software is Copyright (c) 2013 by Wellcome Trust Sanger Institute.

This is free software, licensed under:

```
  The GNU General Public License, Version 3, June 2007
```