NAME
Bio::Tradis - Bio-Tradis contains a set of tools to analyse the output from TraDIS analyses. For more information on the TraDIS method, see http://genome.cshlp.org/content/19/12/2308
VERSION
version 1.4.5
SYNOPSIS
Bio-Tradis provides functionality to:
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detect TraDIS tags in a BAM file - Bio::Tradis::DetectTags
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add the tags to the reads - Bio::Tradis::AddTagsToSeq
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filter reads in a FastQ file containing a user defined tag - Bio::Tradis::FilterTags
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remove tags - Bio::Tradis::RemoveTags
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map to a reference genome - Bio::Tradis::Map
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create an insertion site plot file - Bio::Tradis::TradisPlot
Most of these functions are available as standalone scripts or as perl modules.
AUTHOR
Carla Cummins <[email protected]>
COPYRIGHT AND LICENSE
This software is Copyright (c) 2013 by Wellcome Trust Sanger Institute.
This is free software, licensed under:
The GNU General Public License, Version 3, June 2007