---
name: "Bio::Roary::Output::CoreGeneAlignmentCoordinatesEMBL"
section: "3pm"
platform: "linux"
package: "roary"
version: "3.13.0+dfsg-2"
release: "Debian 13 (Trixie)"
platforms: ["linux"]
url: "https://new.carta.tech/Bio::Roary::Output::CoreGeneAlignmentCoordinatesEMBL"
---

# Bio::Roary::Output::CoreGeneAlignmentCoordinatesEMBL(3pm)

Create an embl file for the header with locations of where genes are in the multifasta alignment of core genes

## NAME

Bio::Roary::Output::CoreGeneAlignmentCoordinatesEMBL - Create an embl file for the header with locations of where genes are in the multifasta alignment of core genes

## VERSION

version 3.13.0

## SYNOPSIS

Create an embl file for the header with locations of where genes are in the multifasta alignment of core genes\
    use Bio::Roary::Output::CoreGeneAlignmentCoordinatesEMBL;

```
   my $obj = Bio::Roary::Output::CoreGeneAlignmentCoordinatesEMBL->new(
        output_filename => 'core_alignment_header.embl',
        multifasta_files => [
            't/data/multifasta_files/1.aln', 't/data/multifasta_files/outof_order.aln',
            't/data/multifasta_files/2.aln', 't/data/multifasta_files/3.aln'
        ],
        gene_lengths => {
            't/data/multifasta_files/1.aln'           => 1,
            't/data/multifasta_files/outof_order.aln' => 10,
            't/data/multifasta_files/2.aln'           => 100,
            't/data/multifasta_files/3.aln'           => 1000
        },
   );
   $obj->create_file;
```

## AUTHOR

Andrew J. Page \<ap13@sanger.ac.uk\>

## COPYRIGHT AND LICENSE

This software is Copyright (c) 2013 by Wellcome Trust Sanger Institute.

This is free software, licensed under:

```
  The GNU General Public License, Version 3, June 2007
```