---
name: "Bio::Roary::IterativeCdhit"
section: "3pm"
platform: "linux"
package: "roary"
version: "3.13.0+dfsg-2"
release: "Debian 13 (Trixie)"
platforms: ["linux"]
url: "https://new.carta.tech/Bio::Roary::IterativeCdhit"
---

# Bio::Roary::IterativeCdhit(3pm)

Run CDhit iteratively with reducing thresholds, removing full clusters each time

## NAME

Bio::Roary::IterativeCdhit - Run CDhit iteratively with reducing thresholds, removing full clusters each time

## VERSION

version 3.13.0

## SYNOPSIS

Run CDhit iteratively with reducing thresholds, removing full clusters each time\
    use Bio::Roary::IterativeCdhit;

```
   my $obj = Bio::Roary::IterativeCdhit->new(
     output_cd_hit_filename   => 'output_cd_hit_filename.fa',
     output_combined_filename => 'output_combined_filename.fa',
     number_of_input_files     => 5,
     output_filtered_clustered_fasta= > 'output_filtered_clustered_fasta.fa',
   );
   $obj->run;
```

## AUTHOR

Andrew J. Page \<ap13@sanger.ac.uk\>

## COPYRIGHT AND LICENSE

This software is Copyright (c) 2013 by Wellcome Trust Sanger Institute.

This is free software, licensed under:

```
  The GNU General Public License, Version 3, June 2007
```