---
name: "Bio::Roary::External::Mcl"
section: "3pm"
platform: "linux"
package: "roary"
version: "3.13.0+dfsg-2"
release: "Debian 13 (Trixie)"
platforms: ["linux"]
url: "https://new.carta.tech/Bio::Roary::External::Mcl"
---

# Bio::Roary::External::Mcl(3pm)

Wrapper around MCL which takes in blast results and outputs clustered results

## NAME

Bio::Roary::External::Mcl - Wrapper around MCL which takes in blast results and outputs clustered results

## VERSION

version 3.13.0

## SYNOPSIS

Wrapper around MCL which takes in blast results and outputs clustered results

```
   use Bio::Roary::External::Mcl;

   my $mcl= Bio::Roary::External::Mcl->new(
     blast_results     => 'db',
     mcxdeblast_exec   => 'mcxdeblast',
     mcl_exec          => 'mcl',
     output_file       => 'output.groups'
   );

   $mcl->run();
```

## AUTHOR

Andrew J. Page \<ap13@sanger.ac.uk\>

## COPYRIGHT AND LICENSE

This software is Copyright (c) 2013 by Wellcome Trust Sanger Institute.

This is free software, licensed under:

```
  The GNU General Public License, Version 3, June 2007
```