Reference

Bio::Roary::External::Mcl(3pm)

Wrapper around MCL which takes in blast results and outputs clustered results

NAME

Bio::Roary::External::Mcl - Wrapper around MCL which takes in blast results and outputs clustered results

VERSION

version 3.13.0

SYNOPSIS

Wrapper around MCL which takes in blast results and outputs clustered results

   use Bio::Roary::External::Mcl;
   
   my $mcl= Bio::Roary::External::Mcl->new(
     blast_results     => 'db',
     mcxdeblast_exec   => 'mcxdeblast',
     mcl_exec          => 'mcl',
     output_file       => 'output.groups'
   );
   
   $mcl->run();

AUTHOR

Andrew J. Page <[email protected]>

COPYRIGHT AND LICENSE

This software is Copyright (c) 2013 by Wellcome Trust Sanger Institute.

This is free software, licensed under:

  The GNU General Public License, Version 3, June 2007

History