---
name: "Bio::Roary::External::Mafft"
section: "3pm"
platform: "linux"
package: "roary"
version: "3.13.0+dfsg-2"
release: "Debian 13 (Trixie)"
platforms: ["linux"]
url: "https://new.carta.tech/Bio::Roary::External::Mafft"
---

# Bio::Roary::External::Mafft(3pm)

Wrapper to run mafft

## NAME

Bio::Roary::External::Mafft - Wrapper to run mafft

## VERSION

version 3.13.0

## SYNOPSIS

Wrapper to run mafft\
    use Bio::Roary::External::Mafft;

```
        my $mafft_obj = Bio::Roary::External::Mafft->new(
          input_filename  => $fasta_file,
          output_filename => $fasta_file.'.aln',
          job_runner      => 'Local'
        );
        $mafft_obj->run();
```

## AUTHOR

Andrew J. Page \<ap13@sanger.ac.uk\>

## COPYRIGHT AND LICENSE

This software is Copyright (c) 2013 by Wellcome Trust Sanger Institute.

This is free software, licensed under:

```
  The GNU General Public License, Version 3, June 2007
```