Bio::OntologyIO::Handlers::InterProHandler(3pm)

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new

 Title   : new
 Usage   : $h = Bio::OntologyIO::Handlers::InterProHandler->new;
 Function: Initializes global variables
 Example :
 Returns : an InterProHandler object
 Args    :

ontology_engine

 Title   : ontology_engine
 Usage   : $obj->ontology_engine($newval)
 Function: Get/set ontology engine. Can be initialized only once.
 Example :
 Returns : value of ontology_engine (a scalar)
 Args    : new value (a scalar, optional)

ontology

 Title   : ontology
 Usage   :
 Function: Get the ontology to add the InterPro terms to.
           The value is determined automatically once ontology_engine
           has been set and if it hasn't been set before.
 Example :
 Returns : A L<Bio::Ontology::OntologyI> implementing object.
 Args    : On set, a L<Bio::Ontology::OntologyI> implementing object.

term_factory

 Title   : term_factory
 Usage   : $obj->term_factory($newval)
 Function: Get/set the ontology term object factory
 Example :
 Returns : value of term_factory (a Bio::Factory::ObjectFactory instance)
 Args    : on set, new value (a Bio::Factory::ObjectFactory instance
           or undef, optional)

_cite_skip

 Title   : _cite_skip
 Usage   : $obj->_cite_skip($newval)
 Function:
 Example :
 Returns : value of _cite_skip (a scalar)
 Args    : new value (a scalar, optional)

_hash

 Title   : _hash
 Usage   : $obj->_hash($newval)
 Function:
 Example :
 Returns : value of _hash (a scalar)
 Args    : new value (a scalar, optional)

_stack

 Title   : _stack
 Usage   : $obj->_stack($newval)
 Function:
 Example :
 Returns : value of _stack (a scalar)
 Args    : new value (a scalar, optional)

_top

 Title   : _top
 Usage   :
 Function:
 Example :
 Returns :
 Args    :

_term

 Title   : _term
 Usage   : $obj->_term($newval)
 Function: Get/set method for the term currently processed.
 Example :
 Returns : value of term (a scalar)
 Args    : new value (a scalar, optional)

_clear_term

 Title   : _clear_term
 Usage   :
 Function: Removes the current term from the handler
 Example :
 Returns :
 Args    :

_names

 Title   : _names
 Usage   : $obj->_names($newval)
 Function:
 Example :
 Returns : value of _names (a scalar)
 Args    : new value (a scalar, optional)

_create_relationship

 Title   : _create_relationship
 Usage   :
 Function: Helper function. Adds relationships to one of the relationship stores.
 Example :
 Returns :
 Args    :

start_element

 Title   : start_element
 Usage   :
 Function: This is a method that is derived from XML::SAX::Base and
           has to be overridden for processing start of xml element
           events. Used internally only.
 Example :
 Returns :
 Args    :

_char_storage

 Title   : _char_storage
 Usage   : $obj->_char_storage($newval)
 Function:
 Example :
 Returns : value of _char_storage (a scalar)
 Args    : new value (a scalar, optional)

characters

 Title   : characters
 Usage   :
 Function: This is a method that is derived from XML::SAX::Base and has to be overridden for processing xml characters events. Used internally only.
 Example :
 Returns :
 Args    :

end_element

 Title   : end_element
 Usage   :
 Function: This is a method that is derived from XML::SAX::Base and has to be overridden for processing end of xml element events. Used internally only.
 Example :
 Returns :
 Args    :

secondary_accessions_map

 Title   : secondary_accessions_map
 Usage   : $obj->secondary_accessions_map($newval)
 Function:
 Example : $map = $interpro_handler->secondary_accessions_map();
 Returns : Reference to a hash that maps InterPro identifier to an
  array reference of secondary accessions following the InterPro
 xml schema.
 Args    : Empty hash reference

_increment_record_count

 Title   : _increment_record_count
 Usage   :
 Function:
 Example :
 Returns :
 Args    :

_increment_processed_count

 Title   : _increment_processed_count
 Usage   :
 Function:
 Example :
 Returns :
 Args    :