Bio::Ontology::SimpleGOEngine(3pm)

Bio::Ontology::SimpleGOEngine - a Ontology Engine for GO implementing OntologyEngineI

  use Bio::Ontology::SimpleGOEngine;

  my $parser = Bio::Ontology::SimpleGOEngine->new
        ( -defs_file => "/home/czmasek/GO/GO.defs",
          -files     => ["/home/czmasek/GO/component.ontology",
                         "/home/czmasek/GO/function.ontology",
                         "/home/czmasek/GO/process.ontology"] );

  my $engine = $parser->parse();

  my $IS_A       = Bio::Ontology::RelationshipType->get_instance( "IS_A" );
  my $PART_OF    = Bio::Ontology::RelationshipType->get_instance( "PART_OF" );
  my $RELATED_TO = Bio::Ontology::RelationshipType->get_instance( "RELATED_TO" );

This class is deprecated and instead Bio::Ontology::OBOEngine should be used. Needs Graph.pm from CPAN.
Mailing Lists User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the Bioperl mailing lists Your participation is much appreciated.

  [email protected]                  - General discussion
  http://bioperl.org/wiki/Mailing_lists  - About the mailing lists

Reporting Bugs Report bugs to the Bioperl bug tracking system to help us keep track the bugs and their resolution. Bug reports can be submitted via the web:

  http://bugzilla.open-bio.org/

Christian M. Zmasek Email: [email protected] or [email protected] WWW: http://www.genetics.wustl.edu/eddy/people/zmasek/ Address:

  Genomics Institute of the Novartis Research Foundation
  10675 John Jay Hopkins Drive
  San Diego, CA 92121

The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _