Reference

Bio::LiveSeq::DNA(3pm)

DNA object for LiveSeq

NAME

Bio::LiveSeq::DNA - DNA object for LiveSeq

SYNOPSIS

  # documentation needed

DESCRIPTION

This holds the DNA sequence (or the RNA in the case of cDNA entries) and is accessed by exons, genes, transcripts... objects

AUTHOR - Joseph A.L. Insana

Email: [email protected], [email protected]

APPENDIX

The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _

new

  Title   : new
  Usage   : $dna = Bio::LiveSeq::DNA->new(-seq => "atcgaccaatggacctca",
                                          -offset => 3 );
  Function: generates a new Bio::LiveSeq::DNA
  Returns : reference to a new object of class DNA
  Errorcode -1
  Args    : a string
        AND an optional offset to create nucleotide labels (default is 1, i.e.
            starting the count of labels from "1") -> do not bother using it ->
            it could be used by alternative loaders !EMBL format
  NOTE    : strand of DNA is set to 1 by default

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