---
name: "Bio::Graphics::Browser2::CAlign"
section: "3pm"
platform: "linux"
package: "gbrowse-calign"
version: "2.56+dfsg-12+b3"
release: "Debian 13 (Trixie)"
platforms: ["linux"]
url: "https://new.carta.tech/Bio::Graphics::Browser2::CAlign"
---

# Bio::Graphics::Browser2::CAlign(3pm)

Compiled helper for Bio::Graphics::Browser::Realign

## NAME

Bio::Graphics::Browser2::CAlign - Compiled helper for Bio::Graphics::Browser::Realign

## SYNOPSIS

No user serviceable parts.

## DESCRIPTION

This module is used internally by Bio::Graphics::Browser2::Realign.  If the module is present, the Smith-Waterman alignment will be faster. Otherwise, Bio::Graphics::Browser2::Realign will fall back to a slower pure-perl implementation.

## SEE ALSO

Bio::Graphics::Browser2::Realign

## AUTHOR

Lincoln Stein \<lstein@cshl.org\>.

Copyright (c) 2003 Cold Spring Harbor Laboratory

This library is free software; you can redistribute it and/or modify it under the same terms as Perl itself.  See DISCLAIMER.txt for disclaimers of warranty.