Reference

Bio::Biblio::MedlineArticle(3pm)

representation of a MEDLINE article

NAME

Bio::Biblio::MedlineArticle - representation of a MEDLINE article

VERSION

version 1.70

SYNOPSIS

  $obj = Bio::Biblio::MedlineArticle->new(-mesh_headings =>
                                            #array ref of hashes
                                         );
  # how are Mesh terms stored:
  use Data::Dumper;
  print Data::Dumper->Dump ( [$obj->mesh_headings], ['MeshHeadings']);
  #It produces (something like) this:
  #'MeshHeadings' => [
  #       { 'descriptorName' => 'Adult' },
  #       { 'descriptorName' => 'Cardiovascular Diseases',
  #         'subHeadings'    => [ { 'subHeading' => 'etiology' },
  #                               { 'majorTopic' => 'Y',
  #                                 'subHeading' => 'mortality' } ] },
  #       { 'descriptorName' => 'Child Development',
  #         'subHeadings'    => [ { 'majorTopic' => 'Y',
  #                                 'subHeading' => 'physiology' } ] },
  #       { 'descriptorName' => 'Human' },
  #      ]

DESCRIPTION

A storage object for a MEDLINE article. See its place in the class hierarchy in http://www.ebi.ac.uk/~senger/openbqs/images/bibobjects_perl.gif

Attributes

The following attributes are specific to this class (however, you can also set and get all attributes defined in the parent classes):

  affiliation
  chemicals                      type: array ref of hashes
  citation_owner
  comment_ins                    type: array ref of hashes
  comment_ons                    type: array ref of hashes
  date_of_electronic_publication
  erratum_fors                   type: array ref of hashes
  erratum_in                     type: array ref of hashes
  gene_symbols
  general_notes                  type: array ref of hashes
  grant_list_complete
  grants                         type: array ref of hashes
  medline_date
  medline_id
  medline_page
  mesh_headings                  type: array ref of hashes
  number_of_references
  original_report_ins            type: array ref of hashes
  other_abstracts                type: array ref of hashes
  other_ids                      type: array ref of hashes
  other_languages
  pmid
  republished_froms              type: array ref of hashes
  republished_ins                type: array ref of hashes
  retraction_ins                 type: array ref of hashes
  retraction_ofs                 type: array ref of hashes
  season
  status
  summary_for_patients_ins       type: array ref of hashes
  update_ins                     type: array ref of hashes
  update_ofs                     type: array ref of hashes
  vernacular_title

SEE ALSO

•

OpenBQS home page

http://www.ebi.ac.uk/~senger/openbqs/

•

Comments to the Perl client

http://www.ebi.ac.uk/~senger/openbqs/Client_perl.html

FEEDBACK

Mailing lists

User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the Bioperl mailing list. Your participation is much appreciated.

  [email protected]                  - General discussion
  http://bioperl.org/wiki/Mailing_lists  - About the mailing lists

Support

Please direct usage questions or support issues to the mailing list: [email protected]

rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address it. Please include a thorough description of the problem with code and data examples if at all possible.

Reporting bugs

Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via the web:

  https://redmine.open-bio.org/projects/bioperl/

LEGAL

Authors

Martin Senger <[email protected]>

Heikki Lehvaslaiho <[email protected]>

Copyright and License

This software is Copyright (c) by 2002 European Bioinformatics Institute and released under the license of the same terms as the perl 5 programming language system itself

History