NAME
AssemblePairs.py - Assembles paired-end reads into a single sequence
DESCRIPTION
usage: AssemblePairs.py [--version] [-h] ...
Assembles paired-end reads into a single sequence
help:
- --version
-
show program's version number and exit
- -h, --help
-
show this help message and exit
subcommands:
-
Assembly method
- align
-
Assemble pairs by aligning ends.
- join
-
Assemble pairs by concatenating ends.
-
reference
-
Assemble pairs by aligning reads against a reference database.
-
sequential
-
Assemble pairs by first attempting de novo assembly, then reference guided assembly.
output files:
-
assemble-pass
-
successfully assembled reads.
-
assemble-fail
-
raw reads failing paired-end assembly.
output annotation fields:
-
<user defined>
-
annotation fields specified by the --1f or --2f arguments.
AUTHOR
This manpage was written by Andreas Tille for the Debian distribution and
can be used for any other usage of the program.