NAME
AlignSets.py - Multiple aligns input sequences by group
DESCRIPTION
usage: AlignSets.py [--version] [-h] ...
Multiple aligns input sequences by group
help:
- --version
-
show program's version number and exit
- -h, --help
-
show this help message and exit
subcommands:
-
Alignment method
- muscle
-
Align sequence sets using muscle.
- offset
-
Align sequence sets using predefined 5' offset.
- table
-
Create a 5' offset table by primer multiple alignment.
output files:
-
align-pass
-
multiple aligned reads.
-
align-fail
-
raw reads failing multiple alignment.
-
offsets-forward
-
5' offset table for input into offset subcommand.
-
offsets-reverse
-
3' offset table for input into offset subcommand.
output annotation fields:
-
None
AUTHOR
This manpage was written by Andreas Tille for the Debian distribution and
can be used for any other usage of the program.