---
name: "AlignRecords.py"
section: "1"
platform: "linux"
package: "changeo"
version: "1.3.0-3"
release: "Debian 13 (Trixie)"
platforms: ["linux"]
url: "https://new.carta.tech/AlignRecords.py"
---

# AlignRecords.py(1)

Repertoire clonal assignment toolkit (Python 3)

## NAME

AlignRecords.py - Repertoire clonal assignment toolkit (Python 3)

## DESCRIPTION

usage: AlignRecords.py \[--version\] \[-h\]  ...

Multiple aligns sequence fields

### help:

- **--version**

  show program's version number and exit

- **-h**, **--help**

  show this help message and exit

### subcommands:

-

  alignment method

- across

  Multiple aligns sequence columns within groups and across rows using MUSCLE.

- within

  Multiple aligns sequence fields within rows using MUSCLE

- block

  Multiple aligns sequence groups across both columns and rows using MUSCLE.

### output files:

-

  align-pass

-

  database with multiple aligned sequences.

-

  align-fail

-

  database with records failing alignment.

### required fields:

-

  sequence\_id, v\_call, j\_call \<field\>

-

  user specified sequence fields to align.

### output fields:

-

  \<field\>\_align

## AUTHOR

 This manpage was written by Nilesh Patra for the Debian distribution and\
  can be used for any other usage of the program.