NAME
AlignRecords.py - Repertoire clonal assignment toolkit (Python 3)
DESCRIPTION
usage: AlignRecords.py [--version] [-h] ...
Multiple aligns sequence fields
help:
- --version
-
show program's version number and exit
- -h, --help
-
show this help message and exit
subcommands:
-
alignment method
- across
-
Multiple aligns sequence columns within groups and across rows using MUSCLE.
- within
-
Multiple aligns sequence fields within rows using MUSCLE
- block
-
Multiple aligns sequence groups across both columns and rows using MUSCLE.
output files:
-
align-pass
-
database with multiple aligned sequences.
-
align-fail
-
database with records failing alignment.
required fields:
-
sequence_id, v_call, j_call <field>
-
user specified sequence fields to align.
output fields:
-
<field>_align
AUTHOR
This manpage was written by Nilesh Patra for the Debian distribution and
can be used for any other usage of the program.