---
name: "Algorithm::HMM::Report"
section: "3pm"
platform: "linux"
package: "psortb"
version: "3.0.6+dfsg-4+b2"
release: "Debian 13 (Trixie)"
platforms: ["linux"]
url: "https://new.carta.tech/Algorithm::HMM::Report"
---

# Algorithm::HMM::Report(3pm)

Report object for the Algorithm::HMM package.

## NAME

Algorithm::HMM::Report - Report object for the Algorithm::HMM package.

## DESCRIPTION

The Algorithm::HMM::Report object is returned by the Algorithm::HMM search method.  It contains the sets of global and domain hits returned by the model.

## SYNOPSIS

```
  # Search the HMM model.  An Algorithm::HMM::Report object is returned.
  my $rep = $hmm->search("AAIELKBPOWELKQJPASDLKJIGE");
  # Get all the global hits from the report object.
  my @ghits = $rep->global_hits();
  # Get all the domain hits from the report object.
  my @dhits = $rep->domain_hits();
```

## METHODS

```
  my @ghits = $rep->global_hits();
  my @dhits = $rep->domain_hits();
```

The **global\_hits()** and **domain\_hits()** methods return lists of Algorithm::HMM::Hit::Global and Algorithm::HMM::Hit::Domain objects respectively.  A global hit is a match across the entire model, while a domain hit is a match on a smaller subsequence of the model.

## AUTHOR

The Algorithm::HMM package was originally written by Cory Spencer \<cspencer@sfu.ca\> of the Simon Fraser University Brinkman Laboratory.  It is currently maintained by Matthew Laird \<matt@brinkman.mbb.sfu.ca\>.

## SEE ALSO

Algorithm::HMM, Algorithm::HMM::Hit::Global, Algorithm::HMM::Hit::Domain