NAME
ANTSJacobian - part of ANTS registration suite
SYNOPSIS
ANTSJacobian ImageDim gWarp outfile uselog maskfn normbytotalbool projectionvector
DESCRIPTION
WARNING! ANTSJacobian may not be working correctly, see CreateJacobianDeterminantImage for an alternative method
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for example ANTSJacobian 3 myWarp.nii Output 1 templatebrainmask.nii 1 1x0 the last 1 normalizes the jacobian by the total in the mask. use this to adjust for head size. 1x0 will project the warp along direction 1,0 --- don't add this option if you don't want to do this